Replicon Annotation Table

Stenotrophomonas_maltophilia_K279a - IS_012560

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Page: 1 of 1  Records: 59

IS Name ORF Name % of DNA Similarity % of Similarity AAs (ISfinder First hit) % of AAs Similarity (Replicon First hit) Identified IS Family ORF Left End ORF Right End ORF Size (bp) ORF Size (aa) Strand Type IS Left End IS Right End IS Length (bp) DR Size (bp) IR Size (bp) IS Coordinates Present (for partials) Length of Partial (bp) General Comments
Change ISStma5 Smlt0026 Reference_copy 100% ISStma5 100% Smlt3083 IS3 ssgr IS3 27002 25896 1107 368 - T 27116 25889 1228 2 20/26      
Change ISStma5 Smlt0027 Reference_copy 100% ISStma5 100% Smlt2479 IS3 ssgr IS3 27052 26765 288 95 - T 27116 25889 1228 2 20/26      
Change ISStma2-p   92% ISStma2     IS3 ssgr IS150 0 0 0 0 + ND 0 241787   ND   241760(1401)-241787(1428) 28  
Change ISStma6 Smlt0368-0369 99.72% ISStma6 99.67% ISStma6 100% Smlt2735 IS110 370082 369168 915 304 - T 370244 369152 1093 0 0      
Change ISStma6 Smlt0465 Reference_copy 100% ISStma6 100% Smlt2351 IS110 478384 479298 915 304 + T 478222 479314 1093 0 0      
Change ISStma9 Smlt0493 Reference_copy 100% ISStma9 100% Smlt2489 IS3 ssgr IS51 503928 503011 918 305 - T 504215 502982 1234 3 27/35      
Change ISStma9 Smlt0494 Reference_copy 100% ISStma9 100% Smlt1663 IS3 ssgr IS51 504152 503880 273 90 - T 504215 502982 1234 3 27/35      
Change ISStma1 Smlt0518 100% ISStma1 100% ISStma1 100% Smlt3938 IS481 526843 525899 945 314 - T 526926 525904 1023 6 19/29      
Change ISStma1 Smlt0558 Reference_copy 100% ISStma1 100% Smlt3938 IS481 572209 573153 945 314 + T 572126 573148 1023 6 19/29      
Change ISStma7 Smlt0666 Reference_copy 100% ISStma7 100% Smlt3573 IS110 687509 686595 915 304 - T 687716 686494 1223 0 0      
Change ISStma7 Smlt0698 99.91% ISStma7 99.67% ISStma7 99.67% Smlt3573 IS110 730601 729687 915 304 - T 730808 729586 1223 0 0      
Change ISStma2 Smlt0807 95.30% ISStma2 98.84% ISStma2 100% Smlt2291 IS3 ssgr IS150 850181 850702 522 173 + T 850133 851560 1428 3 22/24      
Change ISStma2 Smlt0808 95.30% ISStma2 98.73% ISStma2 100% Smlt2292 IS3 ssgr IS150 850585 851532 948 315 + T 850133 851560 1428 3 22/24      
Change ISStma2 Smlt0835 95.23% ISStma2 99.04% ISStma2 100% Smlt3545 IS3 ssgr IS150 877131 876184 948 315 - T 877583 876156 1428 3 22/24      
Change ISStma2 Smlt0836 95.23% ISStma2 99.42% ISStma2 100% Smlt3544 IS3 ssgr IS150 877535 877014 522 173 - T 877583 876156 1428 3 22/24      
Change ISStma7 Smlt1093 100% ISStma7 100% ISStma7 100% Smlt3573 IS110 1143881 1142967 915 304 - T 1144088 1142866 1223 0 0      
Change ISStma10 Smlt1323 Reference_copy 100% ISStma10 No hit IS630 1355532 1356575 1044 347 + T 1355483 1356588 1106 0 15/19      
Change ISStma1-p   100% ISStma1     IS481           ND 1722461         1722461 (1) - 1722536 (76) 76 | Partial IS without detected ORF |
Change ISStma9 Smlt1662 100% ISStma9 100% ISStma9 100% Smlt2489 IS3 ssgr IS51 1723483 1722566 918 305 - T 1723770 1722537 1234 0 27/35      
Change ISStma9 Smlt1663 100% ISStma9 100% ISStma9 100% Smlt2490 IS3 ssgr IS51 1723707 1723435 273 90 - T 1723770 1722537 1234 0 27/35      
Change ISStma7 Smlt1733 99.91% ISStma7 100% ISStma7 100% Smlt3573 IS110 1775488 1776402 915 304 + T 1775281 1776503 1223 0 0      
Change ISStma9 Smlt1845 100% ISStma9 100% ISStma9 100% Smlt1663 IS3 ssgr IS51 1896446 1896718 273 90 + T 1896383 1897616 1234 3 27/35      
Change ISStma9 Smlt1846 100% ISStma9 100% ISStma9 100% Smlt2489 IS3 ssgr IS51 1896670 1897587 918 305 + T 1896383 1897616 1234 3 27/35      
Change Partial Smlt1878   80.45% ISAzo10_aa1 No hit IS3 ssgr IS3 1924823 1925227 405 134 + T 0 0   ND     1499 Ends of the element not found
Change Partial Smlt1879   82.73% ISAzo10_aa2 42.92% Smlt0835 IS3 ssgr IS3 1925224 1926321 1098 365 + T 0 0   ND     1499 Ends of the element not found
Change ISStma7 Smlt2253 99.83% ISStma7 100% ISStma7 100% Smlt3573 IS110 2293054 2293968 915 304 + T 2292847 2294069 1223 0 0      
Change ISStma2 Smlt2291 95.30% ISStma2 98.84% ISStma2 100% Smlt0807 IS3 ssgr IS150 2334049 2334570 522 173 + T 2334001 2335428 1428 3 22/24      
Change ISStma2 Smlt2292 95.30% ISStma2 98.73% ISStma2 100% Smlt0808 IS3 ssgr IS150 2334453 2335400 948 315 + T 2334001 2335428 1428 3 22/24      
Change ISStma6 Smlt2328 99.90% ISStma6 100% ISStma6 100% Smlt2351 IS110 2371589 2372503 915 304 + T 2371427 2372519 1093 0 0      
Change ISStma6 Smlt2351 99.90% ISStma6 100% ISStma6 100% Smlt2328 IS110 2395083 2394169 915 304 - T 2395245 2394153 1093 0 0      
Change ISStma1 Smlt2360 99.90% ISStma1 100% ISStma1 100% Smlt3938 IS481 2403043 2402099 945 314 - T 2403126 2402104 1023 6 19/29      
Change ISStma15-p Smlt2408 Reference_copy 100% ISStma15 78.79% Smlt2489 IS3 ssgr IS51 2442951 2442049 900 300 - T 0 2442023   0 31/36 2442951 (322) - 2442023 (1250) 929 Second part of ISStma15, disrupted by ISStma11. Partial orfB Transposase: [6 to ...
Change ISStma15-p   Reference_copy 100% ISStma15   IS3 ssgr IS51 2442950 2442918 30 10 - T 0 2442023   0 31/36 2442951 (322) - 2442023 (1250) 929 Second part of ISStma15, disrupted by ISStma11. Partial orfA Transposase: [87 to...
Change ISStma11 Smlt2409 Reference_copy 100% ISStma11   ISL3 2443585 2443178 408 135 - P 2447572 2442952 4621 8 20/23     Passenger gene : MerR
Change ISStma11 Smlt2410 Reference_copy 100% ISStma11   ISL3 2443660 2444010 351 116 + P 2447572 2442952 4621 8 20/23     Passenger gene : MerT
Change ISStma11 Smlt2411 Reference_copy 100% ISStma11   ISL3 2444023 2444301 279 92 + P 2447572 2442952 4621 8 20/23     Passenger gene : MerP
Change ISStma11 Smlt2412 Reference_copy 100% ISStma11   ISL3 2444312 2446006 1695 564 + P 2447572 2442952 4621 8 20/23     Passenger gene : MerA
Change ISStma11 Smlt2413 Reference_copy 100% ISStma11 No hit ISL3 2447429 2446089 1341 446 - T 2447572 2442952 4621 8 20/23      
Change ISStma15-p   Reference_copy 100% ISStma15   IS3 ssgr IS51 2447595 2447575 21 7 - T 2447901 0   0 31/36 2447901 (1) - 2447573 (329) 329 First part of ISStma15, disrupted by ISStma11. Partial orfB Transposase: [1 to 7...
Change ISStma15-p Smlt2414 Reference_copy 100% ISStma15 69.23% Smlt1663 IS3 ssgr IS51 2447837 2447574 264 88 - T 2447901 0   0 31/36 2447901 (1) - 2447573 (329) 329 First part of ISStma15, disrupted by ISStma11. Partial orfA Transposase: [1 to 8...
Change ISStma13 Smlt2416 Reference_copy 100% ISStma13 No hit IS3 ssgr IS407 2448185 2448466 282 93 + T 2448133 2449348 1216 0 35/50      
Change ISStma13 Smlt2417 Reference_copy 100% ISStma13 44.58% Smlt2292 IS3 ssgr IS407 2448256 2449308 1053 350 + T 2448133 2449348 1216 0 35/50      
Change Partial Smlt2464   46.90% ISThsp9_aa1 39.75% Smlt2472 Tn3 2491603 2492874 1272 423 + A 0 2495987   ND     4385 Left end not found
Change Partial Smlt2465   46.61% ISSod9_aa4 No hit Tn3 2492899 2495892 2994 997 + T 0 2495987   ND     4385 Left end not found
Change ISStma5 Smlt2478 100% ISStma5 100% ISStma5 100% Smlt3083 IS3 ssgr IS3 2508701 2507595 1107 368 - T 2508813 2507590 1224          
Change ISStma5 Smlt2479 100% ISStma5 100% ISStma5 100% Smlt0027 IS3 ssgr IS3 2508751 2508464 288 95 - T 2508813 2507590 1224          
Change ISStma9 Smlt2489 100% ISStma9 100% ISStma9 100% Smlt1846 IS3 ssgr IS51 2520798 2519881 918 305 - T 2521085 2519852 1234 0 27/35      
Change ISStma9 Smlt2490 100% ISStma9 100% ISStma9 100% Smlt1663 IS3 ssgr IS51 2521022 2520750 273 90 - T 2521085 2519852 1234 0 27/35      
Change ISStma6 Smlt2735 99.72% ISStma6 99.67% ISStma6 99.67% Smlt2351 IS110 2756303 2757217 915 304 + T 2756141 2757233 1093 0 0      
Change ISStma14 Smlt3042 Reference_copy 100% ISStma14 91.57% Smlt2479 IS3 ssgr IS3 3087840 3088127 288 95 + T 3087773 3089003 1231 0 22/33      
Change ISStma14 Smlt3043 Reference_copy 100% ISStma14 93.04% Smlt3083 IS3 ssgr IS3 3087977 3088996 1020 339 + T 3087773 3089003 1231 0 22/33      
Change ISStma5 Smlt3083 99.67% ISStma5 100% ISStma5 100% Smlt2478 IS3 ssgr IS3 3123685 3122585 1101 366 - T 3123801 3122580 1226          
Change ISStma5 Smlt3083A 99.67% ISStma5 98.70% ISStma5 98.70% Smlt2479 IS3 ssgr IS3 3123737 3123454 284 94 - T 3123801 3122580 1226         pseudogene | Partial Transposase: [1 to 20 - 20 aas ] | | Partial Transposase: [19...
Change ISStma7-p   98.24% ISStma7     IS110           ND 3579273         3579273 (1) - 3579329 (56) 57 | Partial IS without detected ORF |
Change ISStma2 Smlt3544 95.37% ISStma2 99.42% ISStma2 100% Smlt0836 IS3 ssgr IS150 3595143 3595664 522 173 + T 3595095 3596522 1428 3 22/24      
Change ISStma2 Smlt3545 95.37% ISStma2 99.04% ISStma2 99.63% Smlt2292 IS3 ssgr IS150 3595547 3596494 948 315 + T 3595095 3596522 1428 3 22/24      
Change ISStma7 Smlt3573 99.91% ISStma7 100% ISStma7 100% Smlt2253 IS110 3623572 3624486 915 304 + T 3623365 3624587 1223 0 0      
Change ISStma1 Smlt3938 100% ISStma1 100% ISStma1 100% Smlt2360 IS481 4037756 4036812 945 314 - T 4037839 4036817 1023 0 19/29      
Change ISStma12 Smlt4369 Reference_copy 100% ISStma12 87.26% Smlt0518 IS481 4482803 4481859 945 314 - T 4482886 4481864 1023 6 19/29      

Page: 1 of 1  Records: 59