ISsaga - Semi-Automatic IS Annotation
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Try out annotation examples (no account requirements) link

  • Acaryochloris marina MBIC11017 - Annotation in progress (read & write features)
  • Stenotrophomonas maltophilia K279a - Finished and proper annotation (read only features)
  • Escherichia coli MG1655 main chromosome - Finished and proper annotation (read only features)

  • News Features and Improvements:
    (1) Draft genomes and metagenomes are now supported (but only for assembled metagenomes);
    (2) Kraken is now integrated for metagenomic projects to assign taxonomic labels for contigs containing IS transposases. Reference PMID: 24580807;
    (3) OASIS (Optimized Annotation System for Insertion Sequences) is now integrated as a new predictor to help the manual annotation steps (see "ANNOTATION" tab -> "OASIS Predictions"). Reference PMID: 22904081;
    (4) Prokka is now integrated in the protein automatic annotation steps for fasta nucleotide submissions, draft genomes and metagenomes. Reference PMID: 24642063;
    (5) The annotation result can now be exported in full GenBank files (for downstream analysis);
    (6) A lot of bugs corrections and improvements in the web interface.

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